Machine-Centric Science - Donny Winston

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https://en.wikipedia.org/wiki/Representational_state_transfer
1 share
https://en.wikipedia.org/wiki/DIKW_pyramid
1 share
https://en.wikipedia.org/wiki/Bohm_Dialogue
1 share

https://github.com/simov/grant
1 share
https://github.com/getsentry/sentry/blob/master/LICENSE&gt
1 share
https://github.com/AtomGraph
1 share

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Sandra Gesing

Episode 28

Friday, February 17, 2023 • Duration 41:21

An interview about FAIR software, workflows, and virtual research environments (VREs) / science gateways with Sandra Gesing, currently a Senior Research Scientist and Scientific Outreach and Diversity, Equity, and Inclusion (DEI) Lead at the Discovery Partners Institute at the University of Illinois, Chicago.

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Christophe Blanchi

Episode 27

Wednesday, January 18, 2023 • Duration 01:12:10

https://doi.org/20.500.14132/chris -->
https://doi.org/20.500.14132/chris?noredirect -->
https://www.dona.net/team/christophe-blanchi

Digital Object Identifier Resolution Protocol (DO-IRP): https://www.dona.net/sites/default/files/2022-06/DO-IRPV3.0--2022-06-30.pdf

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Patrick Huck

Episode 18

Thursday, July 21, 2022 • Duration 53:08

Materials Project (MP) website: https://materialsproject.org/

Novel Materials Discovery (NOMAD) Laboratory: https://nomad-lab.eu/

Contributor Roles Taxonomy: https://credit.niso.org/

Authentication resources (FAIR A1.2):
- https://portier.github.io/using.html
- https://github.com/simov/grant
- https://docs.konghq.com/

U.S. Department of Energy resources:
- Office of Scientific and Technical Information (OSTI) Data ID Service: https://www.osti.gov/data-services
- https://www.energy.gov/science/office-science-pure-data-resources

Connecting with Patrick:
- https://www.linkedin.com/in/tschaume/
- https://twitter.com/tschaume
- https://appliedenergyscience.lbl.gov/people/patrick-huck

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FAIR Implementation Profile (FIP) Ontology

Episode 17

Friday, July 15, 2022 • Duration 09:43

The FAIR Implementation Profile (FIP) Ontology: https://w3id.org/fair/fip/terms/FIP-Ontology

R1.3: metadata and data meet domain-relevant community standards

Episode 16

Monday, June 20, 2022 • Duration 08:10

Linked Open Vocabularies (LOV): https://lov.linkeddata.es/dataset/lov/

FAIRSharing: https://fairsharing.org/

PageRank of Linked Open Vocabularies (LOV): https://donnywinston.com/posts/pagerank-of-linked-open-vocabularies-lov/

Principles of Open Scholarly Infrastructure (POSI): https://openscholarlyinfrastructure.org/

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R1.2: Metadata and data are associated with detailed provenance

Episode 15

Thursday, June 2, 2022 • Duration 07:29

https://www.w3.org/TR/prov-dm/#dfn-provenance

# Component 1: Entities/Activities:
Type: Entity
Type: Activity
Relation: Generation/Invalidation (E-Act)
Relation: Usage (Act-E)
Relation: Communication (Act1-[E]-Act2)

Relation: Trigger/Starter of Start of Act (trigger E, starter Act)
Relation: Trigger/Ender of End of Act End of Act (trigger E, ender Act)

# Component 2: Derivations:
Relation: Derivation (E-E, E-Act)

Relation: Revision (E-E)
Relation: Quotation (E-E)
Relation: Primary Source (E-E)

# Component3 : Agents, Responsibility, and Influence
Type: Agent
Relation: Attribution (E-Agt)
Relation: Association (Act-Agt (role), Act-E (plan))
Relation: Delegation (Agt-Act) - acted on behalf of

Relation: Influencer/Influencee ({E,Act,Agt}-[usage,start,end,generation,invalidation,communication,derviation,attribution,association,delgation]-{E,Act,Agt})

3 core types: entities, activities, agents. “instantaneous events” are put in context of activities.
wrt "time instants":
- generation is at instant of completion of production
- usage is at instant of beginning of utilization
- start, when activity is deemed started, is an instant
- end, when activity is deemed ended, is an instant
- invalidation is at instant of start of destruction, cessation, or expiry

10 influencing relations (not including 3 included subtypes of derivation - (1) [was] revision [of], (2) quotation ("was quoted from"), (3) [had] primary source).

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R1.1: Meta(data) are released with a clear and accessible data usage license

Episode 14

Wednesday, May 25, 2022 • Duration 11:45

The Creative Commons suite of licenses: CC0, CC BY, CC BY-SA, CC-BY-ND, CC BY-NC, CC BY-NC-SA, CC BY-NC-ND.

Code licenses: Server Side Public License, Affero GPL (AGPL), Lesser GPL (LGPL), Mozilla Public License (MPL), Business Source License (used e.g. by Sentry, <https://github.com/getsentry/sentry/blob/master/LICENSE>), Elastic License (for Elasticsearch), Apache 2.0, BSD, MIT. Spectrum of user freedom and redistributor freedom.

"The CRAPL: An academic-strength open source license": <https://matt.might.net/articles/crapl/>

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R1: (Meta)data are richly described with a plurality of accurate and relevant attributes

Episode 13

Wednesday, May 18, 2022 • Duration 09:12

* https://queryunderstanding.com
* http://contentunderstanding.com
* https://www.w3.org/TR/json-ld11-framing/
* https://www.w3.org/TR/shacl/
* https://jasonformat.com/islands-architecture/
* https://www.hydra-cg.com/spec/latest/core/

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I3: (meta)data include qualified references to other (meta)data

Episode 12

Thursday, May 12, 2022 • Duration 05:47

In the W3C Provenance Ontology:
https://www.w3.org/TR/prov-o/#wasDerivedFrom

The HTML Anchor Element:
https://developer.mozilla.org/en-US/docs/Web/HTML/Element/a

I2: (Meta)data use vocabularies that follow the FAIR principles

Episode 11

Wednesday, May 4, 2022 • Duration 06:26

Heather Hedden, "Foundation for a Knowledge Graph Taxonomy Design Best Practices", slides at https://zenodo.org/record/6510205

Teodora Petkova, "The Dialogic Potential of the Web of Data", slides at https://zenodo.org/record/6518557

https://en.wikipedia.org/wiki/Bohm_Dialogue

Tim Berners-Lee's bag of chips

https://www.w3.org/TR/vocab-dcat-2/#Class:Dataset

https://schema.org/Dataset

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Machine-Centric Science – Details, episodes & analysis

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Machine-Centric Science – Details, episodes & analysis

Podcast details

Recent rankings

Apple Podcasts

Spotify

Shared links between episodes and podcasts

Other63

Wikipedia4

Github3

RSS feed quality and score

Publication history

Latest published episodes

Similar podcasts and content

Related Shows Based on Content Similarities

Apple Podcasts

Spotify

Related Shows Based on Content Similarities

Other63

Wikipedia4

Github3