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• Intro to Bayes and Advanced Regression courses (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work !

Chapters:

13:16 Understanding Adaptive and Platform Trials

25:25 Real-World Applications and Innovations in Trials

34:11 Challenges in Implementing Bayesian Adaptive Trials

42:09 The Birth of a Simulation Tool

44:10 The Importance of Simulated Data

48:36 Lessons from High-Stakes Trials

52:53 Navigating Adaptive Trial Designs

56:55 Communicating Complexity to Stakeholders

01:02:29 The Future of Clinical Trials

01:10:24 Skills for the Next Generation of Statisticians

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Giuliano Cruz, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Aubrey Clayton, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Joshua Meehl, Javier Sabio, Kristian Higgins, Matt Rosinski, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser, Julio, Edvin Saveljev, Frederick Ayala, Jeffrey Powell, Gal Kampel, Adan Romero, Blake Walters, Jonathan Morgan, Francesco Madrisotti, Ivy Huang, Gary Clarke, Robert Flannery, Rasmus Hindström, Stefan, Corey Abshire, Mike Loncaric, Ronald Legere, Sergio Dolia, Michael Cao, Yiğit Aşık, Suyog Chandramouli, Guillaume Berthon, Avenicio Baca, Spencer Boucher, Krzysztof Lechowski, Danimal, Jácint Juhász, Sander and Philippe.

Links from the show:

• Berry Consultants
• Scott's podcast
• LBS #45 Biostats & Clinical Trial Design, with Frank Harrell

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Listen to the full episode: https://learnbayesstats.com/episode/96-pharma-models-sports-analytics-stan-news-daniel-lee/

Watch the interview: https://www.youtube.com/watch?v=lnq5ZPlup0E

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas and Luke Gorrie.

• Sign up for Alex's first live cohort, about Hierarchical Model building!
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Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• Why GPs still matter: Gaussian Processes remain a go-to for function estimation, active learning, and experimental design – especially when calibrated uncertainty is non-negotiable.
• Scaling GP inference: Variational methods with inducing points (as in GPflow) make GPs practical on larger datasets without throwing away principled Bayes.
• MCMC in practice: Clever parameterizations and gradient-based samplers tighten mixing and efficiency; use MCMC when you need gold-standard posteriors.
• Bayesian deep learning, pragmatically: Stochastic-gradient training and approximate posteriors bring Bayesian ideas to neural networks at scale.
• Uncertainty that ships: Monte Carlo dropout and related tricks provide fast, usable uncertainty – even if they’re approximations.
• Model complexity ≠ model quality: Understanding capacity, priors, and inductive bias is key to getting trustworthy predictions.
• Deep Gaussian Processes: Layered GPs offer flexibility for complex functions, with clear trade-offs in interpretability and compute.
• Generative models through a Bayesian lens: GANs and friends benefit from explicit priors and uncertainty – useful for safety and downstream decisions.
• Tooling that matters: Frameworks like GPflow lower the friction from idea to implementation, encouraging reproducible, well-tested modeling.
• Where we’re headed: The future of ML is uncertainty-aware by default – integrating UQ tightly into optimization, design, and deployment.

Chapters:

08:44 Function Estimation and Bayesian Deep Learning

10:41 Understanding Deep Gaussian Processes

25:17 Choosing Between Deep GPs and Neural Networks

32:01 Interpretability and Practical Tools for GPs

43:52 Variational Methods in Gaussian Processes

54:44 Deep Neural Networks and Bayesian Inference

01:06:13 The Future of Bayesian Deep Learning

01:12:28 Advice for Aspiring Researchers

In a few days, a consequential election will take place, as citizens of the United States will go to the polls and elect their president — in fact they already started voting. You probably know a few forecasting models that try to predict what will happen on Election Day — who will get elected, by how much and with which coalition of States?

But how do these statistical models work? How do you account for the different sources of uncertainty, be it polling errors, unexpected turnout or media events? How do you model covariation between States? How do you even communicate the model’s results and afterwards assess its performance? To talk about all this, I had the pleasure to talk to Andrew Gelman and Merlin Heidemanns.

Andrew was already on episode 20, to talk about his recent book with Jennifer Hill and Aki Vehtari, “Regression and Other Stories”. He’s a professor of statistics and political science at Columbia University and works on a lot of topics, including: why campaign polls are so variable while elections are so predictable, the statistical challenges of estimating small effects, and methods for surveys and experimental design.

Merlin is a PhD student in Political Science at Columbia University, and he specializes in political methodology. Prior to his PhD, he did a Bachelor's in Political Science at the Freie Universität Berlin.

I hope you’ll enjoy this episode where we dove into the Bayesian model they helped develop for The Economist, and talked more generally about how to forecast elections with statistical methods, and even about the incentives the forecasting industry has as a whole.

Thank you to my Patrons for making this episode possible! Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Links from the show:

• Andrew's website: http://www.stat.columbia.edu/~gelman/
• Andrew's blog: https://statmodeling.stat.columbia.edu/
• Andrew on Twitter: https://twitter.com/statmodeling
• Merlin's website: https://merlinheidemanns.github.io/website/
• Merlin on Twitter: https://twitter.com/MHeidemanns
• The Economist POTUS forecast: https://projects.economist.com/us-2020-forecast/president
• How The Economist presidential forecast works: https://projects.economist.com/us-2020-forecast/president/how-this-works
• GitHub repo of the Economist model: https://github.com/TheEconomist/us-potus-model
• Information, incentives, and goals in election forecasts (Gelman, Hullman & Wlezien): http://www.stat.columbia.edu/~gelman/research/unpublished/forecast_incentives3.pdf
• How to think about extremely...

I don’t know about you, but I’m starting to really miss traveling and just talking to people without having to think about masks, social distance and activating the covid tracking app on my phone. In the coming days, there is one event that, granted, won’t make all of that disappear, but will remind me how enriching it is to meet new people — this event is PyMCon, the first-ever conference about the PyMC ecosystem! To talk about the conference format, goals and program, I had the pleasure to host Ravin Kumar and Quan Nguyen on the show.

Quan is a PhD student in computer science at Washington University in St Louis, USA, researching Bayesian machine learning and one of the PyMCon program committee chairs. He is also the author of several programming books on Python and scientific computing.

Ravin is a core contributor to Arviz and PyMC, and is leading the PyMCon conference. He holds a Bachelors in Mechanical Engineering and a Masters in Manufacturing Engineering. As a Principal Data Scientist he has used Bayesian Statistics to characterize and aid decision making at organizations like SpaceX and Sweetgreen. Ravin is also currently co-authoring a book with Ari Hartikainen, Osvaldo Martin, and Junpeng Lao on Bayesian Statistics due for release in February.

We talked about why they became involved in the conference, parsed through the numerous, amazing talks that are planned, and detailed who the keynote speakers will be… So, If you’re interested the link to register is in the show notes, and there are even two ways to get a free ticket: either by applying to a diversity scholarship, or by being a community partner, which is anyone or any organization working towards diversity and inclusion in tech — all links are in the show notes.

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Links from the show:

• PyMCon speakers: https://pymc-devs.github.io/pymcon/speakers
• Register to PyMCon: https://www.eventbrite.com/e/pymcon-2020-tickets-121404065829
• PyMCon Diversity Scholarship: https://bit.ly/2J3Vb9d
• PyMCon Community Partner Form: https://bit.ly/35yq90L
• PyMC3 -- Probabilistic Programming in Python: https://docs.pymc.io
• Donate to PyMC3: https://numfocus.org/donate-to-pymc3
• PyMC3 for enterprise: https://bit.ly/3jo9jq9
• Ravin on Twitter: https://twitter.com/canyon289
• Quan on the web: https://krisnguyen135.github.io/
• Quan's author page: https://amzn.to/37JsB7r
• Alex talks about polls on the "Local Maximum" podcast: https://bit.ly/3e1Ro7O
• Support "Learning Bayesian Statistics" on Patreon: https://www.patreon.com/learnbayesstats

Thank you to my Patrons for making...

If you’ve studied at a business school, you probably didn’t attend any Bayesian stats course there. Well this isn’t like that in every business schools! Elea McDonnel Feit does integrate Bayesian methods into her teaching at the business school of Drexel University, in Philadelphia, US. 

Elea is an Assistant Professor of Marketing at Drexel, and in this episode she’ll tell us which methods are the most useful in marketing analytics, and why.

Indeed, Elea develops data analysis methods to inform marketing decisions, such as designing new products and planning advertising campaigns. Often faced with missing, unmatched or aggregated data, she uses MCMC sampling, hierarchical models and decision theory to decipher all this.

After an MS in Industrial Engineering at Lehigh University and a PhD in Marketing at the University of Michigan, Elea worked on product design at General Motors and was most recently the Executive Director of the Wharton Customer Analytics Initiative.

Thanks to all these experiences, Elea loves teaching marketing analytics and Bayesian and causal inference at all levels. She even wrote the book R for Marketing Research and Analytics with Chris Chapman, at Springer Press.

In summary, I think you’ll be pretty surprised by how Bayesian the world of marketing is…

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Links from the show:

• Elea's website: http://eleafeit.com/
• R for Marketing Research and Analytics: http://r-marketing.r-forge.r-project.org/
• Elea's Tutorials & Online Courses: http://eleafeit.com/teaching/
• Elea on Twitter: https://twitter.com/eleafeit
• Elea on GitHub: https://github.com/eleafeit
• Tutorial on Conjoint Analysis in R: https://github.com/ksvanhorn/ART-Forum-2017-Stan-Tutorial
• Test & Roll app: https://testandroll.shinyapps.io/testandroll/
• Test & Roll Paper -- Profit-Maximizing A/B Tests: https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3274875
• Principal Stratification for Advertising Experiments: https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3140631
• CausalImpact R package: https://google.github.io/CausalImpact/CausalImpact.html
• Chapter on Data Fusion in marketing: https://link.springer.com/referenceworkentry/10.1007/978-3-319-05542-8_9-1
• Statistical Analysis with Missing Data (Little & Rubin): https://onlinelibrary.wiley.com/doi/book/10.1002/9781119013563
• R-Ladies Philly YouTube channel:

I bet you heard a lot about epidemiological compartmental models such as SIR in the last few months? But what are they exactly? And why are they so useful for epidemiological modeling? 

Elizaveta Semenova will tell you why in this episode, by walking us through the case study she recently wrote with the Stan team. She’ll also tell us how she used Gaussian Processes on spatio-temporal data, to study the spread of Malaria, or to fit dose-response curves in pharmaceutical tests. 

And finally, she’ll tell us how she used Bayesian neural networks for drug toxicity prediction in her latest paper, and how Bayesian neural nets behave compared to classical neural nets. Ow, and you’ll also learn an interesting link between BNNs and Gaussian Processes…

I know: Liza works on _a lot_ of projects! But who is she? Well, she’s a postdoctorate in Bayesian Machine Learning at the pharmaceutical company AstraZeneca, in Cambridge, UK. 

Elizaveta did her masters in theoretical mathematics in Moscow, Russia, and then worked in financial services as an actuary in various European countries. She then did a PhD in epidemiology at the University of Basel, Switzerland. This is where she got interested in health applications – be it epidemiology, global health or more small-scale biological questions. But she’ll tell you all that in the episode ;)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Links from the show:

• Liza on Twitter: https://twitter.com/liza_p_semenova
• Liza on GitHub: https://github.com/elizavetasemenova
• Liza's blog: https://elizavetasemenova.github.io/blog/
• A Bayesian neural network for toxicity prediction: https://www.biorxiv.org/content/10.1101/2020.04.28.065532v2
• Bayesian Neural Networks for toxicity prediction -- Video presentation: https://www.youtube.com/watch?v=BCQ2oVlu_tY&t=751s
• Bayesian workflow for disease transmission modeling in Stan: https://mc-stan.org/users/documentation/case-studies/boarding_school_case_study.html
• Andrew Gelman's comments on the SIR case-study: https://statmodeling.stat.columbia.edu/2020/06/02/this-ones-important-bayesian-workflow-for-disease-transmission-modeling-in-stan/
• Determining organ weight toxicity with Bayesian causal models: https://www.biorxiv.org/content/10.1101/754853v1
• Material for Applied Machine Learning Days ("Embracing uncertainty"): https://github.com/elizavetasemenova/EmbracingUncertainty
• Predicting Drug-Induced Liver Injury with Bayesian Machine Learning: https://pubs.acs.org/doi/abs/10.1021/acs.chemrestox.9b00264
• Ordered Logistic Regression in Stan, PyMC3 and Turing: https://medium.com/@liza_p_semenova/ordered-logistic-regression-and-probabilistic-programming-502d8235ad3f
• PyMCon website: https://pymc-devs.github.io/pymcon/
• PyMCon Call For Proposal: https://pymc-devs.github.io/pymcon/cfp
• PyMCon...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser, Julio, Edvin Saveljev, Frederick Ayala, Jeffrey Powell, Gal Kampel, Adan Romero, Will Geary, Blake Walters, Jonathan Morgan, Francesco Madrisotti, Ivy Huang, Gary Clarke, Robert Flannery, Rasmus Hindström, Stefan, Corey Abshire, Mike Loncaric, David McCormick, Ronald Legere, Sergio Dolia, Michael Cao, Yiğit Aşık and Suyog Chandramouli.

Takeaways:

• Player tracking data revolutionized sports analytics.
• Decision-making in sports involves managing uncertainty and budget constraints.
• Luke emphasizes the importance of portfolio optimization in team management.
• Clubs with high budgets can afford inefficiencies in player acquisition.
• Statistical methods provide a probabilistic approach to player value.
• Removing human bias is crucial in sports decision-making.
• Understanding player performance distributions aids in contract decisions.
• The goal is to maximize performance value per dollar spent.
• Model validation in sports requires focusing on edge cases.

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• Designing experiments is about optimal data gathering.
• The optimal design maximizes the amount of information.
• The best experiment reduces uncertainty the most.
• Computational challenges limit the feasibility of BED in practice.
• Amortized Bayesian inference can speed up computations.
• A good underlying model is crucial for effective BED.
• Adaptive experiments are more complex than static ones.
• The future of BED is promising with advancements in AI.

Chapters:

00:00 Introduction to Bayesian Experimental Design

07:51 Understanding Bayesian Experimental Design

19:58 Computational Challenges in Bayesian Experimental Design

28:47 Innovations in Bayesian Experimental Design

40:43 Practical Applications of Bayesian Experimental Design

52:12 Future of Bayesian Experimental Design

01:01:17 Real-World Applications and Impact

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov,...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

In this episode, I am honored to talk with a legend of sports analytics in general, and baseball analytics in particular. I am of course talking about Jim Albert.

Jim grew up in the Philadelphia area and studied statistics at Purdue University. He then spent his entire 41-year academic career at Bowling Green State University, which gave him a wide diversity of classes to teach – from intro statistics through doctoral level.

As you’ll hear, he’s always had a passion for Bayesian education, Bayesian modeling and learning about statistics through sports. I find that passion fascinating about Jim, and I suspect that’s one of the main reasons for his prolific career — really, the list of his writings and teachings is impressive; just go take a look at the show notes.

Now an Emeritus Professor of Bowling Green, Jim is retired, but still an active tennis player and writer on sports analytics — his blog, “Exploring Baseball with R”, is nearing 400 posts!

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Nathaniel Neitzke, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Raul Maldonado, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Trey Causey, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony and Joshua Meehl.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Links from the show:

• Jim’s website: https://bayesball.github.io/
• Jim’s baseball blog: https://baseballwithr.wordpress.com/
• Jim on...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

Matt Hoffman has already worked on many topics in his life – music information retrieval, speech enhancement, user behavior modeling, social network analysis, astronomy, you name it.

Obviously, picking questions for him was hard, so we ended up talking more or less freely — which is one of my favorite types of episodes, to be honest.

You’ll hear about the circumstances Matt would advise picking up Bayesian stats, generalized HMC, blocked samplers, why do the samplers he works on have food-based names, etc.

In case you don’t know him, Matt is a research scientist at Google. Before that, he did a postdoc in the Columbia Stats department, working with Andrew Gelman, and a Ph.D at Princeton, working with David Blei and Perry Cook.

Matt is probably best known for his work in approximate Bayesian inference algorithms, such as stochastic variational inference and the no-U-turn sampler, but he’s also worked on a wide range of applications, and contributed to software such as Stan and TensorFlow Probability.

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor, Thomas Wiecki, Chad Scherrer, Nathaniel Neitzke, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Joshua Duncan, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Raul Maldonado, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, David Haas, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Trey Causey, Andreas Kröpelin, Raphaël R, Nicolas Rode and Gabriel Stechschulte.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Links from the show:

• Matt’s website: http://matthewdhoffman.com/
• Matt on Google Scholar: https://scholar.google.com/citations?hl=en&user=IeHKeGYAAAAJ&view_op=list_works
• The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte Carlo: https://www.jmlr.org/papers/volume15/hoffman14a/hoffman14a.pdf
• Tuning-Free Generalized Hamiltonian Monte Carlo:

Episode sponsored by Tidelift: tidelift.com

It’s been a while since we talked about biostatistics and bioinformatics on this podcast, so I thought it could be interesting to talk to Jacki Buros — and that was a very good idea!

She’ll walk us through examples of Bayesian models she uses to, for instance, work on biomarker discovery for cancer immunotherapies. She’ll also introduce you to survival models — their usefulness, their powers and their challenges.

Interestingly, all of this will highlight a handful of skills that Jacki would try to instill in her students if she had to teach Bayesian methods.

The Head of Data and Analytics at Generable, a state-of-the-art Bayesian platform for oncology clinical trials, Jacki has been working in biostatistics and bioinformatics for over 15 years. She started in cardiology research at the TIMI Study Group at Harvard Medical School before working in Alzheimer’s Disease genetics at Boston University and in biomarker discovery for cancer immunotherapies at the Hammer Lab. Most recently she was the Lead Biostatistician at the Institute for Next Generation Health Care at Mount Sinai.

An open-source enthusiast, Jacki is also a contributor to Stan and rstanarm, and the author of the survivalstan package, a library of Stan models for survival analysis.

Last but not least, Jacki is an avid sailor and skier!

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Brian Huey, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, Adam Bartonicek, William Benton, Alan O'Donnell, Mark Ormsby, Demetri Pananos, James Ahloy, Jon Berezowski, Robin Taylor, Thomas Wiecki, Chad Scherrer, Nathaniel Neitzke, Zwelithini Tunyiswa, Elea McDonnell Feit, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Joshua Duncan, Ian Moran, Paul Oreto, Colin Caprani, George Ho, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Jonathan Sedar, Hugo Botha, Vinh Nguyen, Raul Maldonado, Marcin Elantkowski, Tim Radtke, Adam C. Smith, Will Kurt and Andrew Moskowitz.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Links from the show:

• Nominate "Learn Bayes Stats" as "Best Podcast of 2021" and "Best Tech Podcast" by entering its Apple feed in this form!
• Jacki on Twitter: https://twitter.com/jackiburos
• Jacki on GitHub: https://github.com/jburos
• Jacki on Orcid: https://orcid.org/0000-0001-9588-4889
• survivalstan -- Survival Models in Stan: https://github.com/hammerlab/survivalstan
• rstanarm -- R model-fitting functions using Stan:

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• Matt emphasizes the importance of Bayesian statistics in scenarios with limited data.
• Communicating insights to coaches is a crucial skill for data analysts.
• Building a data team requires understanding the needs of the coaching staff.
• Player recruitment is a significant focus in football analytics.
• The integration of data science in sports is still evolving.
• Effective data modeling must consider the practical application in games.
• Collaboration between data analysts and coaches enhances decision-making.
• Having a robust data infrastructure is essential for efficient analysis.
• The landscape of sports analytics is becoming increasingly competitive. 
• Player recruitment involves analyzing various data models.
• Biases in traditional football statistics can skew player evaluations.
• Statistical techniques should leverage the structure of football data.
• Tracking data opens new avenues for understanding player movements.
• The role of data analysis in football will continue to grow.
• Aspiring analysts should focus on curiosity and practical experience.

Chapters:

00:00 Introduction to Football Analytics and Matt's Journey

04:54 The Role of Bayesian Methods in Football

10:20 Challenges in Communicating Data Insights

17:03 Building Relationships with Coaches

22:09 The Structure of the Data Team at Como

26:18 Focus on Player Recruitment and Transfer Strategies

28:48 January Transfer Window Insights

30:54 Biases in Football Data Analysis

34:11 Comparative Analysis of Men's and Women's Football

36:55 Statistical Techniques in Football Analysis

42:48 The Impact of Tracking Data on Football Analysis

45:49 The Future of Data-Driven Football Strategies

47:27 Advice for Aspiring Football Analysts

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• Causal assumptions are crucial for statistical modeling.
• Deep learning can be integrated with causal models.
• Statistical rigor is essential in evaluating LLMs.
• Causal representation learning is a growing field.
• Inductive biases in AI should match key mechanisms.
• Causal AI can improve decision-making processes.
• The future of AI lies in understanding causal relationships.

Chapters:

00:00 Introduction to Causal AI and Its Importance

16:34 The Journey to Writing Causal AI

28:05 Integrating Graphical Causality with Deep Learning

40:10 The Evolution of Probabilistic Machine Learning

44:34 Practical Applications of Causal AI with LLMs

49:48 Exploring Multimodal Models and Causality

56:15 Tools and Frameworks for Causal AI

01:03:19 Statistical Rigor in Evaluating LLMs

01:12:22 Causal Thinking in Real-World Deployments

01:19:52 Trade-offs in Generative Causal Models

01:25:14 Future of Causal Generative Modeling

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Marcus Nölke, Maggi Mackintosh, Grant...

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• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Listen to the full episode: https://learnbayesstats.com/episode/99-exploring-quantum-physics-bayesian-stats-chris-ferrie/

Watch the interview: https://www.youtube.com/watch?v=pRaT6FLF7A8

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie and Cory Kiser.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

You know I love epistemology — the study of how we know what we know. It was high time I dedicated a whole episode to this topic. And what better guest than Aubrey Clayton, the author of the book Bernoulli's Fallacy: Statistical Illogic and the Crisis of Modern Science. I’m in the middle of reading it, and it’s a really great read!

Aubrey is a mathematician in Boston who teaches the philosophy of probability and statistics at the Harvard Extension School. He holds a PhD in mathematics from the University of California, Berkeley, and his writing has appeared in Pacific Standard, Nautilus, and the Boston Globe.

We talked about what he deems “a catastrophic error in the logic of the standard statistical methods in almost all the sciences” and why this error manifests even outside of science, like in medicine, law, public policy, etc.

But don’t worry, we’re not doomed — we’ll also see where we go from there. As a big fan of E.T Jaynes, Aubrey will also tell us how this US scientist influenced his own thinking as well as the field of Bayesian inference in general.

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Brian Huey, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, Adam Bartonicek, William Benton, Alan O'Donnell, Mark Ormsby, Demetri Pananos, James Ahloy, Robin Taylor, Thomas Wiecki, Chad Scherrer, Nathaniel Neitzke, Zwelithini Tunyiswa, Elea McDonnell Feit, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Joshua Duncan, Ian Moran, Paul Oreto, Colin Caprani, George Ho, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Raul Maldonado, Marcin Elantkowski, Tim Radtke, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Matthew McAnear, Michael Hankin, Cameron Smith, Luis Iberico, Alejandro Morales, Tomáš Frýda, Ryan Wesslen and Andreas Netti.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Links from the show:

• Aubrey's website: https://aubreyclayton.com/
• Aubrey on Twitter: https://twitter.com/aubreyclayton
• Bernoulli's Fallacy: https://aubreyclayton.com/bernoulli
• Aubrey's probability theory lectures based on E.T Jayne's work: https://www.youtube.com/playlist?list=PL9v9IXDsJkktefQzX39wC2YG07vw7DsQ_
• What Society Gets Wrong About Statistics: https://www.youtube.com/watch?v=fDulF2MzsIU
• The Prosecutor's Fallacy: https://en.wikipedia.org/wiki/Prosecutor%27s_fallacy
• The Theory That Would Not Die -- How Bayes' Rule Cracked the Enigma Code:

You wanna know something funny? A sentence from this episode became a meme. And people even made stickers out of it! Ok, that’s not true. But if someone could pull off something like that, it would surely be Chelsea Parlett-Pelleriti.

Indeed, Chelsea’s research focuses on using statistics and machine learning on behavioral data, but her more general goal is to empower people to be able to do their own statistical analyses, through consulting, education, and, as you may have seen, stats memes on Twitter.

A full-time teacher, researcher and statistical consultant, Chelsea earned an MsC and PhD in Computational and Data Science in 2021 from Chapman University. Her courses include R, intro to programming (in Python), and data science.

In a nutshell, Chelsea is, by her own admission, an avid lover of anything silly or statistical. Hopefully, this episode turned out to be both at once! I’ll let you be the judge of that…

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Brian Huey, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, Adam Bartonicek, William Benton, Alan O'Donnell, Mark Ormsby, Demetri Pananos, James Ahloy, Jon Berezowski, Robin Taylor, Thomas Wiecki, Chad Scherrer, Nathaniel Neitzke, Zwelithini Tunyiswa, Elea McDonnell Feit, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Joshua Duncan, Ian Moran, Paul Oreto, Colin Caprani, George Ho, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Raul Maldonado, Marcin Elantkowski, Tim Radtke, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin and Philippe Labonde.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Links from the show:

• Chelsea's website: https://cmparlettpelleriti.github.io/index.html
• Chelsea on Twitter: https://twitter.com/ChelseaParlett
• Michael Betancourt's sparsity case study: https://betanalpha.github.io/assets/case_studies/modeling_sparsity.html
• LBS #31 -- Bayesian Cognitive Modeling & Decision-Making, with Michael Lee: https://www.learnbayesstats.com/episode/31-bayesian-cognitive-modeling-michael-lee
• Projection predictive variable selection R package: https://mc-stan.org/projpred/
• SelectiveInference R package: https://cran.r-project.org/web/packages/selectiveInference/selectiveInference.pdf
• Statistical learning and selective inference: https://www.pnas.org/content/112/25/7629
• LBS #29 -- Model Assessment, Non-Parametric Models, with Aki Vehtari:

Have you watched the series « The English Game », on Netflix? Well, I think you should — it’s a fascinating dive into how football went from an aristocratic to a popular sport in the late 19th century England. Today it is so popular that it became a valuable business to do statistics on the game and its players!

To talk about that, I invited Kevin Minkus on the show — he’s a data scientist and soccer fan living in Philadelphia. Kevin’s currently working at Monetate on ecommerce problems, and prior to Monetate he worked on property and casualty insurance pricing.

He spends a lot of his spare time working on problems in football analytics and is a contributor at American Soccer Analysis, a website and podcast dedicated to… football made or played in the US (or “soccer”, as they say over there). Kevin is responsible for some of their data management and devops, and he recently wrote a guide to football analytics for the Major League Soccer’s website, entitled « Soccer Analytics 101 ».

To be honest, I had a great time talking for one hour about two of my passions — football and stats! Soooo, maybe 2020 isn’t that bad after all… Ow, and beyond football, Kevin is also into the digital humanities, web development, 3D animation, machine learning, and… the bassoon!

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Links from the show:

• Kevin on Twitter: https://twitter.com/kevinminkus
• Kevin on GitHub: https://github.com/kcm30
• Soccer Analytics 101: https://www.mlssoccer.com/soccer-analytics-guide/2020/soccer-analytics-101
• American Soccer Analysis: https://www.americansocceranalysis.com/

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Brian Huey, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, Adam Bartonicek, William Benton, Alan O'Donnell, Mark Ormsby, Demetri Pananos, James Ahloy, Jon Berezowski, Robin Taylor, Thomas Wiecki, Chad Scherrer, Vincent Arel-Bundock, Nathaniel Neitzke, Zwelithini Tunyiswa, Elea McDonnell Feit, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Joshua Duncan, Ian Moran and Paul Oreto.

When explaining Bayesian statistics to people who don’t know anything about stats, I often say that MCMC is about walking many different paths in lots of parallel universes, and then counting what happened in all these universes.

And in a sense, this whole podcast is dedicated to sampling the whole distribution of Bayesian practitioners. So, for this episode, I thought we’d take a break of pure, hard modeling and talk about how to get involved into Bayesian statistics and open-source development, how companies use Bayesian tools, and what common struggles and misperceptions the latter suffer from.

Quite the program, right? The good news is that Peadar Coyle, my guest for this episode, has done all of that! Coming to us from Armagh, Ireland, Peadar is a fellow PyMC core developer and was a data science and data engineer consultant until recently – a period during which he has covered all of modern startup data science, from AB testing to dashboards to data engineering to putting models into production.

From these experiences, Peadar has written a book consisting of numerous interviews with data scientists throughout the world – and do consider buying it, as money goes to the NumFOCUS organization, under which many Bayesian stats packages live, like Stan, ArviZ, PyMC, etc.

Now living in London, Peadar recently founded the start-up Aflorithmic, an AI solution that aims at developing personalized voice-first solutions for brands and enterprises. Their technology is also used to support children, families and elderly coping with the mental health challenges of COVID-19 confinements.

Before all that, Peadar studied physics, philosophy and mathematics at the universities of Bristol and Luxembourg. When he’s away from keyboard, he enjoys the outdoors, cooking and, of course, watching rugby!

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Brian Huey, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, Adam Bartonicek, William Benton, Alan O'Donnell, Mark Ormsby, Demetri Pananos, James Ahloy, Jon Berezowski, Robin Taylor, Thomas Wiecki, Chad Scherrer, Vincent Arel-Bundock, Nathaniel Neitzke, Zwelithini Tunyiswa, Elea McDonnell Feit, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Joshua Duncan, Ian Moran, Paul Oreto, Colin Caprani, George Ho, Colin Carroll and Nathaniel Burbank.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Links from the show:

• "Matchmaking Dinner" announcement: https://twitter.com/alex_andorra/status/1351136756087734272
• How to get acces to "Matchmaking Dinner" episodes: https://www.patreon.com/learnbayesstats
• Peadar on Twitter: https://twitter.com/springcoil
• Peadar's website: https://peadarcoyle.com/
• Peadar on GitHub: https://github.com/springcoil
• Interviews with Data Scientists -- A discussion of the Industy and the current trends:

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• User experience is crucial for the adoption of Stan.
• Recent innovations include adding tuples to the Stan language, new features and improved error messages.
• Tuples allow for more efficient data handling in Stan.
• Beginners often struggle with the compiled nature of Stan.
• Improving error messages is crucial for user experience.
• BridgeStan allows for integration with other programming languages and makes it very easy for people to use Stan models.
• Community engagement is vital for the development of Stan.
• New samplers are being developed to enhance performance.
• The future of Stan includes more user-friendly features.

Chapters:

00:00 Introduction to the Live Episode

02:55 Meet the Stan Core Developers

05:47 Brian Ward's Journey into Bayesian Statistics

09:10 Charles Margossian's Contributions to Stan

11:49 Recent Projects and Innovations in Stan

15:07 User-Friendly Features and Enhancements

18:11 Understanding Tuples and Their Importance

21:06 Challenges for Beginners in Stan

24:08 Pedagogical Approaches to Bayesian Statistics

30:54 Optimizing Monte Carlo Estimators

32:24 Reimagining Stan's Structure

34:21 The Promise of Automatic Reparameterization

35:49 Exploring BridgeStan

40:29 The Future of Samplers in Stan

43:45 Evaluating New Algorithms

47:01 Specific Algorithms for Unique Problems

50:00 Understanding Model Performance

54:21 The Impact of Stan on Bayesian Research

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

In this episode, Andy Aschwanden and Doug Brinkerhoff tell us about their work in glaciology and the application of Bayesian statistics in studying glaciers. They discuss the use of computer models and data analysis in understanding glacier behavior and predicting sea level rise, and a lot of other fascinating topics.

Andy grew up in the Swiss Alps, and studied Earth Sciences, with a focus on atmospheric and climate science and glaciology. After his PhD, Andy moved to Fairbanks, Alaska, and became involved with the Parallel Ice Sheet Model, the first open-source and openly-developed ice sheet model.

His first PhD student was no other than… Doug Brinkerhoff! Doug did an MS in computer science at the University of Montana, focusing on numerical methods for ice sheet modeling, and then moved to Fairbanks to complete his PhD. While in Fairbanks, he became an ardent Bayesian after “seeing that uncertainty needs to be embraced rather than ignored”. Doug has since moved back to Montana, becoming faculty in the University of Montana’s computer science department.

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser, Julio, Edvin Saveljev, Frederick Ayala, Jeffrey Powell, Gal Kampel, Adan Romero and Will Geary.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Listen to the full episode: https://learnbayesstats.com/episode/101-black-holes-collisions-gravitational-waves-ligo-experts-christopher-berry-john-veitch/

Watch the interview: https://www.youtube.com/watch?v=ZaZwCcrJlik

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser and Julio.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

In this episode, we dive deep into gravitational wave astronomy, with Christopher Berry and John Veitch, two senior lecturers at the University of Glasgow and experts from the LIGO-VIRGO collaboration. They explain the significance of detecting gravitational waves, which are essential for understanding black holes and neutron stars collisions. This research not only sheds light on these distant events but also helps us grasp the fundamental workings of the universe.

Our discussion focuses on the integral role of Bayesian statistics, detailing how they use nested sampling for extracting crucial information from the subtle signals of gravitational waves. This approach is vital for parameter estimation and understanding the distribution of cosmic sources through population inferences.

Concluding the episode, Christopher and John highlight the latest advancements in black hole astrophysics and tests of general relativity, and touch upon the exciting prospects and challenges of the upcoming space-based LISA mission.

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser and Julio.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Takeaways:

 ⁃    Gravitational wave analysis involves using Bayesian statistics for parameter estimation and population...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Listen to the full episode: https://learnbayesstats.com/episode/100-reactive-message-passing-automated-inference-in-julia-dmitry-bagaev/

Watch the interview: https://www.youtube.com/watch?v=ZG3H0xxCXTQ

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser and Julio.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Today’s clip is from episode 136 of the podcast, with Haavard Rue & Janet van Niekerk.

Alex, Haavard and Janet explore the world of Bayesian inference with INLA, a fast and deterministic method that revolutionizes how we handle large datasets and complex models.

Discover the power of INLA, and why it can make your models go much faster! Get the full conversation here.

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Transcript

This is an automatic transcript and may therefore contain errors. Please get in touch if you're willing to correct them.

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Listen to the full episode: https://learnbayesstats.com/episode/99-exploring-quantum-physics-bayesian-stats-chris-ferrie/

Watch the interview: https://www.youtube.com/watch?v=pRaT6FLF7A8

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie and Cory Kiser.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Listen to the full episode: https://learnbayesstats.com/episode/98-fusing-statistical-physics-machine-learning-adaptive-mcmc-marylou-gabrie/

Watch the interview: https://www.youtube.com/watch?v=vVqZ0WWXX7g

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie and Cory Kiser.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• State space models and traditional time series models are well-suited to forecast loss ratios in the insurance industry, although actuaries have been slow to adopt modern statistical methods.
• Working with limited data is a challenge, but informed priors and hierarchical models can help improve the modeling process.
• Bayesian model stacking allows for blending together different model predictions and taking the best of both (or all if more than 2 models) worlds.
• Model comparison is done using out-of-sample performance metrics, such as the expected log point-wise predictive density (ELPD). Brute leave-future-out cross-validation is often used due to the time-series nature of the data.
• Stacking or averaging models are trained on out-of-sample performance metrics to determine the weights for blending the predictions. Model stacking can be a powerful approach for combining predictions from candidate models. Hierarchical stacking in particular is useful when weights are assumed to vary according to covariates.
• BayesBlend is a Python package developed by Ledger Investing that simplifies the implementation of stacking models, including pseudo Bayesian model averaging, stacking, and hierarchical stacking.
• Evaluating the performance of patient time series models requires considering multiple metrics, including log likelihood-based metrics like ELPD, as well as more absolute metrics like RMSE and mean absolute error.
• Using robust variants of metrics like ELPD can help address issues with extreme outliers. For example, t-distribution estimators of ELPD as opposed to sample sum/mean estimators.
• It is important to evaluate model performance from different perspectives and consider the trade-offs between different metrics. Evaluating models based solely on traditional metrics can limit understanding and trust in the model. Consider additional factors such as interpretability, maintainability, and productionization.
• Simulation-based calibration (SBC) is a valuable tool for assessing parameter estimation and model correctness. It allows for the interpretation of model parameters and the identification of coding errors.
• In industries like insurance, where regulations may restrict model choices, classical statistical approaches still play a significant role. However, there is potential for Bayesian methods and generative AI in certain areas.

This is it folks! This is the first of the special episodes I want to do from time to time, to expand our perspective and get inspired by what’s going on elsewhere. The guests will not come directly from the Bayesian world, but will still be related to science or programming.

For the first episode of the kind, I had the chance to chat with Michael Kennedy! Michael is not only a very knowledgeable and respected member of the Python community, he’s also the founder and host of Talk Python To Me, the most popular Python podcast. He’s the founder and chief author at Talk Python Training, where he develops many Python developer online courses. 

And before that, Michael was a professional software trainer for over 10 years – he has taught numerous developers throughout the world! But Michael is not only an entrepreneur and teacher – he’s also a father, a husband, and a proud inhabitant of Portland, OR! 

As you’ll hear, our conversation spanned a large array of topics — the role of Python in science and research; how it came to be so important in data science, and why; what are Python’s threats and weaknesses and how it should evolve to not become obsolete. Michael also has interesting thoughts on the role of programming in education and how it relates to geometry — but I’ll let you discover that one by yourself…

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Links from the show:

• Michael on Twitter: https://twitter.com/mkennedy
• The Talk Python Podcast: https://talkpython.fm/
• The Python Bytes Podcast: https://pythonbytes.fm/
• Michael's blog: https://blog.michaelckennedy.net/
• Michael on Crowdcast: https://www.crowdcast.io/mkennedy
• Jupytext -- Turn Jupyter Notebooks to scripts and (R) Markdown files: https://jupytext.readthedocs.io/en/latest/introduction.html

I bet you love penguins, right? The same goes for koalas, or puppies! But what about sharks? Well, my next guest loves sharks — she loves them so much that she works a lot with marine biologists, even though she’s a statistician! 

Vianey Leos Barajas is indeed a statistician primarily working in the areas of statistical ecology, time series modeling, Bayesian inference and spatial modeling of environmental data. Vianey did her PhD in statistics at Iowa State University and is now a postdoctoral researcher at North Carolina State University.

In this episode, she’ll tell us what she’s working on that involves sharks, sheep and other animals! Trying to model animal movements, Vianey often encounters the dreaded multimodal posteriors. She’ll explain why these can be very tricky to estimate, and why ecological data are particularly suited for hidden Markov models and spatio-temporal models — don’t worry, Vianey will explain what these models are in the episode!

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Links from the show:

• Vianey on Twitter: https://twitter.com/vianey_lb
• Hidden Markov Models in the Stan User's Guide: https://mc-stan.org/docs/2_18/stan-users-guide/hmms-section.html
• Tagging Basketball Events with HMM in Stan: https://mc-stan.org/users/documentation/case-studies/bball-hmm.html
• HMMs with Python and PyMC3: https://ericmjl.github.io/bayesian-analysis-recipes/notebooks/markov-models/
• The Discrete Adjoint Method -- Efficient Derivatives for Functions of Discrete Sequences (Betancourt, Margossian, Leos-Barajas): https://arxiv.org/abs/2002.00326
• Vianey will be doing an HMM 90-minute introduction at the International Statistical Ecology Conference in June 2020: http://www.isec2020.org/
• Stan for Ecology -- a website for the ecology community in Stan: https://stanecology.github.io/
• LatinR 2020 -- 7th to 9th October 2020: https://latin-r.com/
• Migramar -- Science for the Conservation of Marine Migratory Species in the Eastern Pacific: http://migramar.org/hi/en/
• Pelagios Kakunja -- Know, educate and conserve for a sustainable sea: https://www.pelagioskakunja.org/

Book recommendations:

• Hidden Markov Models for Time Series: https://www.routledge.com/Hidden-Markov-Models-for-Time-Series-An-Introduction-Using-R-Second-Edition/Zucchini-MacDonald-Langrock/p/book/9781482253832
• Handbook of Mixture Analysis:

Today’s clip is from episode 147 of the podcast, with Martin Ingram.

Alex and Martin discuss the intricacies of variational inference, particularly focusing on the ADVI method and its challenges. They explore the evolution of approximate inference methods, the significance of mean field variational inference, and the innovative linear response technique for covariance estimation.

The discussion also delves into the trade-offs between stochastic and deterministic optimization techniques, providing insights into their implications for Bayesian statistics.

Get the full discussion here.

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Transcript

This is an automatic transcript and may therefore contain errors. Please get in touch if you're willing to correct them.

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• DADVI is a new approach to variational inference that aims to improve speed and accuracy.
• DADVI allows for faster Bayesian inference without sacrificing model flexibility.
• Linear response can help recover covariance estimates from mean estimates.
• DADVI performs well in mixed models and hierarchical structures.
• Normalizing flows present an interesting avenue for enhancing variational inference.
• DADVI can handle large datasets effectively, improving predictive performance.
• Future enhancements for DADVI may include GPU support and linear response integration.

Chapters:

13:17 Understanding DADVI: A New Approach

21:54 Mean Field Variational Inference Explained

26:38 Linear Response and Covariance Estimation

31:21 Deterministic vs Stochastic Optimization in DADVI

35:00 Understanding DADVI and Its Optimization Landscape

37:59 Theoretical Insights and Practical Applications of DADVI

42:12 Comparative Performance of DADVI in Real Applications

45:03 Challenges and Effectiveness of DADVI in Various Models

48:51 Exploring Future Directions for Variational Inference

53:04 Final Thoughts and Advice for Practitioners

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Giuliano Cruz, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Aubrey Clayton, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël...

Today’s clip is from episode 146 of the podcast, with Ethan Smith.

Alex and Ethan discuss the application of Bayesian inference in high energy density physics, particularly in analyzing complex data sets. They highlight the advantages of Bayesian techniques, such as incorporating prior knowledge and managing uncertainties.

They also shares insights from an ongoing experimental project focused on measuring the equation of state of plasma at extreme pressures. Finally, Alex and Ethan advocate for best practices in managing large codebases and ensuring model reliability.

Get the full discussion here.

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Transcript

This is an automatic transcript and may therefore contain errors. Please get in touch if you're willing to correct them.

• Sign up for Alex's first live cohort, about Hierarchical Model building
• Soccer Factor Model Dashboard

Today’s clip is from episode 143 of the podcast, with Christoph Bamberg.

Christoph shares his journey into Bayesian statistics and computational modeling, the challenges faced in academia, and the technical tools used in research.

Alex and Christoph delve into a specific study on appetite regulation and cognitive performance, exploring the implications of framing in psychological research and the importance of careful communication in health-related contexts.

Get the full discussion here.

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Transcript

This is an automatic transcript and may therefore contain errors. Please get in touch if you're willing to correct them.

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Get early access to Alex's next live-cohort courses!
• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• BART as a core tool: Gabriel explains how Bayesian Additive Regression Trees provide robust uncertainty quantification and serve as a reliable baseline model in many domains.
• Rust for performance: His Rust re-implementation of BART dramatically improves speed and scalability, making it feasible for larger datasets and real-world IoT applications.
• Strengths and trade-offs: BART avoids overfitting and handles missing data gracefully, though it is slower than other tree-based approaches.
• Big data meets Bayes: Gabriel shares strategies for applying Bayesian methods with big data, including when variational inference helps balance scale with rigor.
• Optimization and decision-making: He highlights how BART models can be embedded into optimization frameworks, opening doors for sequential decision-making.
• Open source matters: Gabriel emphasizes the importance of communities like PyMC and Bambi, encouraging newcomers to start with small contributions.

Chapters:

05:10 – From economics to IoT and Bayesian statistics

18:55 – Introduction to BART (Bayesian Additive Regression Trees)

24:40 – Re-implementing BART in Rust for speed and scalability

32:05 – Comparing BART with Gaussian Processes and other tree methods

39:50 – Strengths and limitations of BART

47:15 – Handling missing data and different likelihoods

54:30 – Variational inference and big data challenges

01:01:10 – Embedding BART into optimization and decision-making frameworks

01:08:45 – Open source, PyMC, and community support

01:15:20 – Advice for newcomers

01:20:55 – Future of BART, Rust, and probabilistic programming

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• INLA is a fast, deterministic method for Bayesian inference.
• INLA is particularly useful for large datasets and complex models.
• The R INLA package is widely used for implementing INLA methodology.
• INLA has been applied in various fields, including epidemiology and air quality control.
• Computational challenges in INLA are minimal compared to MCMC methods.
• The Smart Gradient method enhances the efficiency of INLA.
• INLA can handle various likelihoods, not just Gaussian.
• SPDs allow for more efficient computations in spatial modeling.
• The new INLA methodology scales better for large datasets, especially in medical imaging.
• Priors in Bayesian models can significantly impact the results and should be chosen carefully.
• Penalized complexity priors (PC priors) help prevent overfitting in models.
• Understanding the underlying mathematics of priors is crucial for effective modeling.
• The integration of GPUs in computational methods is a key future direction for INLA.
• The development of new sparse solvers is essential for handling larger models efficiently.

Chapters:

06:06 Understanding INLA: A Comparison with MCMC

08:46 Applications of INLA in Real-World Scenarios

11:58 Latent Gaussian Models and Their Importance

15:12 Impactful Applications of INLA in Health and Environment

18:09 Computational Challenges and Solutions in INLA

21:06 Stochastic Partial Differential Equations in Spatial Modeling

23:55 Future Directions and Innovations in INLA

39:51 Exploring Stochastic Differential Equations

43:02 Advancements in INLA Methodology

50:40 Getting Started with INLA

56:25 Understanding Priors in Bayesian Models

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad

Get early access to Alex's next live-cohort courses!

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• Teaching students to write out their own models is crucial.
• Developing a sports analytics portfolio is essential for aspiring analysts.
• Modeling expectations in sports analytics can be misleading.
• Tracking data can significantly improve player performance models.
• Ron encourages students to engage in active learning through projects.
• The importance of understanding the dependency structure in data is vital.
• Ron aims to integrate more diverse sports analytics topics into his teaching.

Chapters:

03:51 The Journey into Sports Analytics

15:20 The Evolution of Bayesian Statistics in Sports

26:01 Innovations in NFL WAR Modeling

39:23 Causal Modeling in Sports Analytics

46:29 Defining Replacement Levels in Sports

48:26 The Going Deep Framework and Big Data in Football

52:47 Modeling Expectations in Football Data

55:40 Teaching Statistical Concepts in Sports Analytics

01:01:54 The Importance of Model Building in Education

01:04:46 Statistical Thinking in Sports Analytics

01:10:55 Innovative Research in Player Movement

01:15:47 Exploring Data Needs in American Football

01:18:43 Building a Sports Analytics Portfolio

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell,...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• BoTorch is designed for researchers who want flexibility in Bayesian optimization.
• The integration of BoTorch with PyTorch allows for differentiable programming.
• Scalability at Meta involves careful software engineering practices and testing.
• Open-source contributions enhance the development and community engagement of BoTorch.
• LLMs can help incorporate human knowledge into optimization processes.
• Max emphasizes the importance of clear communication of uncertainty to stakeholders.
• The role of a researcher in industry is often more application-focused than in academia.
• Max's team at Meta works on adaptive experimentation and Bayesian optimization.

Chapters:

08:51 Understanding BoTorch

12:12 Use Cases and Flexibility of BoTorch

15:02 Integration with PyTorch and GPyTorch

17:57 Practical Applications of BoTorch

20:50 Open Source Culture at Meta and BoTorch's Development

43:10 The Power of Open Source Collaboration

47:49 Scalability Challenges at Meta

51:02 Balancing Depth and Breadth in Problem Solving

55:08 Communicating Uncertainty to Stakeholders

01:00:53 Learning from Missteps in Research

01:05:06 Integrating External Contributions into BoTorch

01:08:00 The Future of Optimization with LLMs

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode,...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• Teemu focuses on calibration assessments and predictive checking in Bayesian workflows.
• Simulation-based calibration (SBC) checks model implementation
• SBC involves drawing realizations from prior and generating prior predictive data.
• Visual predictive checking is crucial for assessing model predictions.
• Prior predictive checks should be done before looking at data.
• Posterior SBC focuses on the area of parameter space most relevant to the data.
• Challenges in SBC include inference time.
• Visualizations complement numerical metrics in Bayesian modeling.
• Amortized Bayesian inference benefits from SBC for quick posterior checks. The calibration of Bayesian models is more intuitive than Frequentist models.
• Choosing the right visualization depends on data characteristics.
• Using multiple visualization methods can reveal different insights.
• Visualizations should be viewed as models of the data.
• Goodness of fit tests can enhance visualization accuracy.
• Uncertainty visualization is crucial but often overlooked.

Chapters:

09:53 Understanding Simulation-Based Calibration (SBC)

15:03 Practical Applications of SBC in Bayesian Modeling

22:19 Challenges in Developing Posterior SBC

29:41 The Role of SBC in Amortized Bayesian Inference

33:47 The Importance of Visual Predictive Checking

36:50 Predictive Checking and Model Fitting

38:08 The Importance of Visual Checks

40:54 Choosing Visualization Types

49:06 Visualizations as Models

55:02 Uncertainty Visualization in Bayesian Modeling

01:00:05 Future Trends in Probabilistic Modeling

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand...

ICYMI, I'll be in London next week, for a live episode of the Learning Bayesian Statistics podcast 🍾

Come say hi on June 24 at Imperial College London! We'll be talking about uncertainty quantification — not just in theory, but in the messy, practical reality of building models that are supposed to work in the real world.

🎟️ Get your tickets!

Some of the questions we’ll unpack:

🔍 Why is it so hard to model uncertainty reliably?

⚠️ How do overconfident models break things in production?

🧠 What tools and frameworks help today?

🔄 What do we need to rethink if we want robust ML over the next decade?

Joining me on stage: the brilliant Mélodie Monod, Yingzhen Li and François-Xavier Briol -- researchers doing cutting-edge work on these questions, across Bayesian methods, statistical learning, and real-world ML deployment.

A huge thank you to Oliver Ratmann for setting this up!

📍 Imperial-X, White City Campus (Room LRT 608)

🗓️ June 24, 11:30–13:00

🎙️ Doors open at 11:30 — we start at noon sharp

Come say hi, ask hard questions, and be part of the recording.

🎟️ Get your tickets!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh,...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• Setting appropriate priors is crucial to avoid overfitting in models.
• R-squared can be used effectively in Bayesian frameworks for model evaluation.
• Dynamic regression can incorporate time-varying coefficients to capture changing relationships.
• Predictively consistent priors enhance model interpretability and performance.
• Identifiability is a challenge in time series models.
• State space models provide structure compared to Gaussian processes.
• Priors influence the model's ability to explain variance.
• Starting with simple models can reveal interesting dynamics.
• Understanding the relationship between states and variance is key.
• State-space models allow for dynamic analysis of time series data.
• AI can enhance the process of prior elicitation in statistical models.

Chapters:

10:09 Understanding State Space Models

14:53 Predictively Consistent Priors

20:02 Dynamic Regression and AR Models

25:08 Inflation Forecasting

50:49 Understanding Time Series Data and Economic Analysis

57:04 Exploring Dynamic Regression Models

01:05:52 The Role of Priors

01:15:36 Future Trends in Probabilistic Programming

01:20:05 Innovations in Bayesian Model Selection

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• Zero Sum constraints allow for better sampling and estimation in hierarchical models.
• Understanding the difference between population and sample means is crucial.
• A library for zero-sum normal effects would be beneficial.
• Practical solutions can yield decent predictions even with limitations.
• Cholesky parameterization can be adapted for positive correlation matrices.
• Understanding the geometry of sampling spaces is crucial.
• The relationship between eigenvalues and sampling is complex.
• Collaboration and sharing knowledge enhance research outcomes.
• Innovative approaches can simplify complex statistical problems.

Chapters:

03:35 Sean Pinkney's Journey to Bayesian Modeling

11:21 The Zero-Sum Normal Project Explained

18:52 Technical Insights on Zero-Sum Constraints

32:04 Handling New Elements in Bayesian Models

36:19 Understanding Population Parameters and Predictions

49:11 Exploring Flexible Cholesky Parameterization

01:07:23 Closing Thoughts and Future Directions

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser, Julio, Edvin Saveljev, Frederick Ayala, Jeffrey Powell, Gal Kampel, Adan Romero, Will Geary, Blake Walters, Jonathan Morgan, Francesco Madrisotti, Ivy Huang, Gary...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

Check out Hugo’s latest episode with Fei-Fei Li, on How Human-Centered AI Actually Gets Built

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• Computational cognitive science seeks to understand intelligence mathematically.
• Bayesian statistics is crucial for understanding human cognition.
• Inductive biases help explain how humans learn from limited data.
• Eliciting prior distributions can reveal implicit beliefs.
• The wisdom of individuals can provide richer insights than averaging group responses.
• Generative AI can mimic human cognitive processes.
• Human intelligence is shaped by constraints of data, computation, and communication.
• AI systems operate under different constraints than human cognition. Human intelligence differs fundamentally from machine intelligence.
• Generative AI can complement and enhance human learning.
• AI systems currently lack intrinsic human compatibility.
• Language training in AI helps align its understanding with human perspectives.
• Reinforcement learning from human feedback can lead to misalignment of AI goals.
• Representational alignment can improve AI's understanding of human concepts.
• AI can help humans make better decisions by providing relevant information.
• Research should focus on solving problems rather than just methods.

Chapters:

00:00 Understanding Computational Cognitive Science

13:52 Bayesian Models and Human Cognition

29:50 Eliciting Implicit Prior Distributions

38:07 The Relationship Between Human and AI Intelligence

45:15 Aligning Human and Machine Preferences

50:26 Innovations in AI and Human Interaction

55:35 Resource Rationality in Decision Making

01:00:07 Language Learning in AI Models

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser, Julio, Edvin Saveljev, Frederick Ayala, Jeffrey Powell, Gal Kampel, Adan Romero, Will Geary, Blake Walters, Jonathan Morgan, Francesco Madrisotti, Ivy Huang, Gary Clarke, Robert Flannery, Rasmus Hindström, Stefan, Corey Abshire, Mike Loncaric, David McCormick, Ronald Legere, Sergio Dolia, Michael Cao, Yiğit Aşık and Suyog Chandramouli.

Takeaways:

• Epidemiology requires a blend of mathematical and statistical understanding.
• Models are essential for informing public health decisions during epidemics.
• The COVID-19 pandemic highlighted the importance of rapid modeling.
• Misconceptions about data can lead to misunderstandings in public health.
• Effective communication is crucial for conveying complex epidemiological concepts.
• Epidemic thinking can be applied to various fields, including marketing and finance.
• Public health policies should be informed by robust modeling and data analysis.
• Automation can help streamline data analysis in epidemic response.
• Understanding the limitations of models...

How is Julia doing? I’m talking about the programming language, of course! What does the probabilistic programming landscape in Julia look like? What are Julia’s distinctive features, and when would it be interesting to use it?

To talk about that, I invited Chad Scherrer. Chad is a Senior Research Scientist at RelationalAI, a company that uses Artificial Intelligence technologies to solve business problems.

Coming from a mathematics background, Chad did his PhD at Indiana University of Bloomington and has been working in statistics and data science for a decade now. Through this experience, he’s been using and developing probabilistic programming languages – so he’s familiar with python, R, PyMC, Stan and all the blockbusters of the field. 

But since 2018, he’s particularly interested in Julia and developed Soss, an open-source lightweight probabilistic programming package for Julia. In this episode, he’ll tell us why he decided to create this package, and which choices he made that made Soss what it is today. But we’ll also talk about other projects in Julia, like Turing or Gen for instance.

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Links from the show:

• Chad's Website: https://cscherrer.github.io/
• Chad on Twitter: https://twitter.com/ChadScherrer
• Soss Package: https://github.com/cscherrer/Soss.jl
• Soss Presentation at 2019 Strata NYC: https://slides.com/cscherrer/2019-09-26-strata#/
• Passage -- A Parallel Sampler Generator for Hierarchical Bayesian Modeling: https://bit.ly/2UTmaYB
• Dynamic HMC in Julia: https://github.com/tpapp/DynamicHMC.jl
• Advanced HMC in Julia: https://github.com/TuringLang/AdvancedHMC.jl
• Monte Carlo Measurements in Julia: https://github.com/baggepinnen/MonteCarloMeasurements.jl
• Turing.jl -- Bayesian inference with probabilistic programming: https://turing.ml/dev/
• Gen.jl -- Probabilistic modeling and inference in Julia: https://www.gen.dev/
• Etalumis -- Bringing Probabilistic Programming to Scientific Simulators at Scale: https://arxiv.org/abs/1907.03382
• Omega.jl -- A programming language for causal and probabilistic reasoning: http://www.zenna.org/Omega.jl/latest/
• JuliaLang -- The Ingredients for a Composable Programming Language: https://white.ucc.asn.au/2020/02/09/whycompositionaljulia.html
• Simpy -- Discrete event simulation for Python:

You can’t study psychology up until your PhD and end-up doing very mathematical and computational data science at Google right? It’s too hard of a U-turn — some would even say it’s NUTS, just because they like bad puns… Well think again, because Junpeng Lao did just that!

Before doing data science at Google, Junpeng was a cognitive psychology researcher at the University of Fribourg, Switzerland. Working in Python, Matlab and occasionally in R, Junpeng is a prolific open-source contributor, particularly to the popular TensorFlow and PyMC3 libraries. He also maintains the PyMC Discourse on his free time, where he amazingly answers all kinds of various and very specific questions!

In this episode, he’ll tell you what the core characteristics of TensorFlow Probability are, and when you would use TFP instead of another probabilistic programming framework, like Stan or PyMC3. He’ll also explain why PyMC4 will be based on TensorFlow Probability itself, and what future contributions he has in mind for these two amazing libraries. Finally, Junpeng will share with you his workflow for debugging a model, or just for better understanding your models.

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Links from the show: 

• Junpeng's blog: https://junpenglao.xyz/
• Junpeng on Twitter: https://twitter.com/junpenglao
• Junpeng on GitHub: https://github.com/junpenglao
• Advanced Bayesian Modeling Tutorial: https://discourse.pymc.io/t/advance-bayesian-modelling-with-pymc3/1439
• Stan Devs' Prior Choice Recommendations: https://github.com/stan-dev/stan/wiki/Prior-Choice-Recommendations
• PyMC Discourse: https://discourse.pymc.io/
• PyMC3 - Probabilistic Programming in Python: https://docs.pymc.io/
• Tensor Flow Probability: https://www.tensorflow.org/probability/

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Takeaways:

• The hype around AI in science often fails to deliver practical results.
• Bayesian deep learning combines the strengths of deep learning and Bayesian statistics.
• Fine-tuning LLMs with Bayesian methods improves prediction calibration.
• There is no single dominant library for Bayesian deep learning yet.
• Real-world applications of Bayesian deep learning exist in various fields.
• Prior knowledge is crucial for the effectiveness of Bayesian deep learning.
• Data efficiency in AI can be enhanced by incorporating prior knowledge.
• Generative AI and Bayesian deep learning can inform each other.
• The complexity of a problem influences the choice between Bayesian and traditional deep learning.
• Meta-learning enhances the efficiency of Bayesian models.
• PAC-Bayesian theory merges Bayesian and frequentist ideas.
• Laplace inference offers a cost-effective approximation.
• Subspace inference can optimize parameter efficiency.
• Bayesian deep learning is crucial for reliable predictions.
• Effective communication of uncertainty is essential.
• Realistic benchmarks are needed for Bayesian methods
• Collaboration and communication in the AI community are vital.

Chapters:

00:00 Introduction to Bayesian Deep Learning

06:12 Vincent's Journey into Machine Learning

12:42 Defining Bayesian Deep Learning

17:23 Current Landscape of Bayesian Libraries

22:02 Real-World Applications of Bayesian Deep Learning

24:29 When to Use Bayesian Deep Learning

29:36 Data Efficient AI and Generative Modeling

31:59 Exploring Generative AI and Meta-Learning

34:19 Understanding Bayesian Deep Learning and Prior Knowledge

39:01 Algorithms for Bayesian Deep Learning Models

43:25 Advancements in Efficient Inference Techniques

49:35 The Future of AI Models and Reliability

52:47 Advice for Aspiring Researchers in AI

56:06 Future Projects and Research Directions

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade,...

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Listen to the full episode: https://learnbayesstats.com/episode/100-reactive-message-passing-automated-inference-in-julia-dmitry-bagaev/

Watch the interview: https://www.youtube.com/watch?v=ZG3H0xxCXTQ

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser and Julio.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Proudly sponsored by PyMC Labs, the Bayesian Consultancy. Book a call, or get in touch!

• My Intuitive Bayes Online Courses
• 1:1 Mentorship with me

Changing perspective is often a great way to solve burning research problems. Riemannian spaces are such a perspective change, as Arto Klami, an Associate Professor of computer science at the University of Helsinki and member of the Finnish Center for Artificial Intelligence, will tell us in this episode.

He explains the concept of Riemannian spaces, their application in inference algorithms, how they can help sampling Bayesian models, and their similarity with normalizing flows, that we discussed in episode 98.

Arto also introduces PreliZ, a tool for prior elicitation, and highlights its benefits in simplifying the process of setting priors, thus improving the accuracy of our models.

When Arto is not solving mathematical equations, you’ll find him cycling, or around a good board game.

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ !

Thank you to my Patrons for making this episode possible!

Yusuke Saito, Avi Bryant, Ero Carrera, Giuliano Cruz, Tim Gasser, James Wade, Tradd Salvo, William Benton, James Ahloy, Robin Taylor,, Chad Scherrer, Zwelithini Tunyiswa, Bertrand Wilden, James Thompson, Stephen Oates, Gian Luca Di Tanna, Jack Wells, Matthew Maldonado, Ian Costley, Ally Salim, Larry Gill, Ian Moran, Paul Oreto, Colin Caprani, Colin Carroll, Nathaniel Burbank, Michael Osthege, Rémi Louf, Clive Edelsten, Henri Wallen, Hugo Botha, Vinh Nguyen, Marcin Elantkowski, Adam C. Smith, Will Kurt, Andrew Moskowitz, Hector Munoz, Marco Gorelli, Simon Kessell, Bradley Rode, Patrick Kelley, Rick Anderson, Casper de Bruin, Philippe Labonde, Michael Hankin, Cameron Smith, Tomáš Frýda, Ryan Wesslen, Andreas Netti, Riley King, Yoshiyuki Hamajima, Sven De Maeyer, Michael DeCrescenzo, Fergal M, Mason Yahr, Naoya Kanai, Steven Rowland, Aubrey Clayton, Jeannine Sue, Omri Har Shemesh, Scott Anthony Robson, Robert Yolken, Or Duek, Pavel Dusek, Paul Cox, Andreas Kröpelin, Raphaël R, Nicolas Rode, Gabriel Stechschulte, Arkady, Kurt TeKolste, Gergely Juhasz, Marcus Nölke, Maggi Mackintosh, Grant Pezzolesi, Avram Aelony, Joshua Meehl, Javier Sabio, Kristian Higgins, Alex Jones, Gregorio Aguilar, Matt Rosinski, Bart Trudeau, Luis Fonseca, Dante Gates, Matt Niccolls, Maksim Kuznecov, Michael Thomas, Luke Gorrie, Cory Kiser and Julio.

Visit https://www.patreon.com/learnbayesstats to unlock exclusive Bayesian swag ;)

Takeaways:

- Riemannian spaces offer a way to improve computational efficiency and accuracy in Bayesian inference by considering the curvature of the posterior distribution.

- Riemannian spaces can be used in Laplace approximation and Markov chain Monte Carlo...

Today’s clip is from episode 129 of the podcast, with AI expert and researcher Vincent Fortuin.

This conversation delves into the intricacies of Bayesian deep learning, contrasting it with traditional deep learning and exploring its applications and challenges.

Get the full discussion at https://learnbayesstats.com/episode/129-bayesian-deep-learning-ai-for-science-vincent-fortuin

• Intro to Bayes Course (first 2 lessons free)
• Advanced Regression Course (first 2 lessons free)

Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work!

Visit our Patreon page to unlock exclusive Bayesian swag ;)

Transcript

This is an automatic transcript and may therefore contain errors. Please get in touch if you're willing to correct them.