Simon's Bench Talk – Détails, épisodes et analyse

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Simon's Bench Talk

Singleron

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Fréquence : 1 épisode/49j. Total Éps: 3

Simon’s Bench Talk is the go-to podcast for the single cell sequencing community. We ditch the formal presentations to discuss the reality of lab life, cover every aspect of the single cell workflow and update you on the most recent trends in the single cell field. Created by scientists, for scientists, Simon's Bench Talk is about the grit, the grind, and the genius required to master single cell genomics. Subscribe for your regular dose of technical deep-dives and honest lab-life stories.

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Données mises à jour le 02/10/2026

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Why everyone needs bioinformatics skills now

vendredi 17 juillet 2026 • Durée 14:38

Why are bioinformatics skills becoming essential for every life scientist? And how is AI changing the way researchers analyze biological data?In the third episode of Simon's Bench Talk, we sit down with Deniz Sinar, Bioinformatician at Singleron Biotechnologies, to discuss why bioinformatics is no longer just for computational specialists, it's becoming a core skill for modern biology.From single-cell sequencing to AI-assisted coding, Deniz explains how researchers can overcome common data analysis bottlenecks, become more independent, and unlock deeper biological insights without needing to become expert programmers.In this episode, you'll learn:🔬 Why bioinformatics is now an essential skill for biologists🤖 How AI is transforming biological data analysis💻 Whether every researcher really needs to learn coding🧬 Why single-cell projects often stall after sequencing📊 The biggest challenges in data interpretation and analysis📚 The most valuable bioinformatics skills to learn first🚀 Free resources and tools that can help researchers get startedWhether you're a graduate student, wet-lab scientist, bioinformatician, or simply interested in the future of life sciences, this episode offers practical insights into navigating today's data-driven research landscape.Resources mentioned in this episode:• celeLens Cloud – Interactive single-cell data analysis platformhttps://singleron.bio/products/celele...• Synecosys – Single-cell knowledge databasehttps://singleron.bio/products/syneco...• Free educational resources on the Singleron YouTube channelhttps://singleron.bio/free-bioinforma...👍 If you enjoyed this episode, don't forget to Like, Subscribe, and turn on notifications for more conversations on single cell biology, genomics, and the latest advances in life science research.

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How to find the T cells that matter

mardi 9 juin 2026 • Durée 24:38

What if your next routine blood draw could provide a complete "immune passport"—revealing every vaccine you’ve ever had, every disease you’re currently fighting, and exactly how your body will respond to a new threat? In this episode of Simon's Bench Talk, host Samantha sits down with Sander Wuyts, Co-founder and CEO of ImmuneWatch. Moving from a background in microbiome sequencing over to advanced immunology , Sander and his team are closing the functional gap in T-cell sequencing. By applying machine learning algorithms, ImmuneWatch is putting a precise name, function, and meaning onto billions of unique immune cells. We dive deep into how single-cell resolution is transforming phase 1 oncology clinical trials, optimizing personalized cancer vaccines in real time , and shaping the future of pathogen-agnostic pandemic preparedness. Key Takeaways from This EpisodeThe Functional Gap: While the scientific community could previously sequence T-cell receptors (TCRs), they often had no idea what they were actually reacting to. ImmuneWatch provides that missing functional layer.Real-Time Actions: Unlike the microbiome, the immune system reacts instantly. Measuring immune responses from simple blood draws offers highly direct and actionable clinical insights. The General AI Limit: While LLMs are excellent for scripting and pipeline automation , specialized tasks like predicting TCR-epitope binding require deep niche data and specialized structural AI models. 🔗 Resources & LinksImmuneWatch Website: www.immunewatch.com Singleron Website:https://Singleron.bio If today's episode got you thinking about where your own research meets immune profiling at single-cell resolution, we want to keep the conversation going! Leave a comment below with your thoughts on Precision Medicine 2.0.

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How to Master Tissue Dissociation

Épisode 1

jeudi 9 avril 2026 • Durée 17:22

In this episode of our podcast “Simon’s Bench Talk”, our experts dive deep into the technical hurdles of turning solid tissue into single cell suspensions. We step away from the perfect textbook examples to discuss the real-world examples from the lab: tubes that arrive seemingly empty because the samples are too tiny to see, tricky tissues, and the clever workarounds used to save a project.

In this episode, you’ll learn:

The “Invisible” Sample: How we processed a Guinea pig ganglia biopsy that was too small to be weighed or seen—and still got 20,000 nuclei.
The C. elegans Struggle: Why the real challenge wasn’t the worm’s stubborn cuticle, but its thousands of eggs.
The Pancreas Paradox: Why a sample can look perfect under a microscope but fail in sequencing (and how to fix it).
Lab Hacks: The fractional digestion trick for protecting fragile cells and which tissues prefer a bit of extra seasoning.
Single Nuclei: When to stop fighting for whole cells and why pivoting to single-nuclei (snRNA-seq) is sometimes a strategic win rather than a compromise.

Expert: Celia Fernández-Sanz, PhD is a leading voice in the field of single cell sequencing. Based in Cologne, Germany, she heads Singleron’s service department, where she coordinates the processing of hundreds of diverse and often difficult sample types. Driven by a relentless drive to optimize and troubleshoot, Celia has developed an unmatched expertise in solving the specific bottlenecks—like tissue dissociation—that define the success of every single cell experiment.

Your Host: Samantha Langer, PhD After years of hands-on research at the bench, Samantha transitioned her scientific expertise into the world of science communication. Driven by a curiosity to uncover the real stories that standard protocols leave out, she bridges the gap between high-level genomics and the practical, reality of the lab.

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Simon's Bench Talk – Détails, épisodes et analyse

Détails du podcast

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